Journal: Antibiotics

Article Title: Genetic Characterization of Antibiotic-Resistant Staphylococcus spp. and Mammaliicoccus sciuri from Healthy Humans and Poultry in Nigeria

doi: 10.3390/antibiotics13080733

Figure Lengend Snippet: Distribution of the confirmed Staphylococcus spp. isolates, including M. sciuri .

Article Snippet: The genus Staphylococcus includes 72 validly published species ( https://lpsn.dsmz.de/search?word=Staphylococcus , accessed on 13 June 2024).

Techniques:

Journal: Antibiotics

Article Title: Genetic Characterization of Antibiotic-Resistant Staphylococcus spp. and Mammaliicoccus sciuri from Healthy Humans and Poultry in Nigeria

doi: 10.3390/antibiotics13080733

Figure Lengend Snippet: Percentage of resistant Staphylococcus spp., including M. sciuri isolates.

Article Snippet: The genus Staphylococcus includes 72 validly published species ( https://lpsn.dsmz.de/search?word=Staphylococcus , accessed on 13 June 2024).

Techniques:

Journal: Antibiotics

Article Title: Genetic Characterization of Antibiotic-Resistant Staphylococcus spp. and Mammaliicoccus sciuri from Healthy Humans and Poultry in Nigeria

doi: 10.3390/antibiotics13080733

Figure Lengend Snippet: Resistance profile of the Staphylococcus spp., including M. sciuri isolates.

Article Snippet: The genus Staphylococcus includes 72 validly published species ( https://lpsn.dsmz.de/search?word=Staphylococcus , accessed on 13 June 2024).

Techniques:

Journal: Antibiotics

Article Title: Genetic Characterization of Antibiotic-Resistant Staphylococcus spp. and Mammaliicoccus sciuri from Healthy Humans and Poultry in Nigeria

doi: 10.3390/antibiotics13080733

Figure Lengend Snippet: Resistance phenotypes in the Staphylococcus spp., including M. sciuri isolates.

Article Snippet: The genus Staphylococcus includes 72 validly published species ( https://lpsn.dsmz.de/search?word=Staphylococcus , accessed on 13 June 2024).

Techniques:

Journal: The Journal of antimicrobial chemotherapy

Article Title: The bla and mec families of β-lactam resistance genes in the genera Macrococcus, Mammaliicoccus and Staphylococcus: an in-depth analysis with emphasis on Macrococcus.

doi: 10.1093/jac/dkac107

Figure Lengend Snippet: Figure 2. Chromosome comparison of the twelve Macrococcus species. M. canis 19/EPI0118 (GenBank: CP072837) that contains a composite ΨSCCmecB islands and McRImecD-1187 was used as reference in BLAST Ring Image Generator (BRIG).201 Query sequences and coverage are indicated in the key at the right. If available, a complete genome sequence was used instead of draft type strain sequence, namely for M. caseolyticus (strain IMD0819; GenBank: CP021058.1), M. bohemicus (19Msa422; CP054482), M. epidermidis (Epi3002-OL; CP073819) and M. equipercicus (Epi0143-OL; CP073809). Orthogroups (OG) with genes present in all Macrococcus, all Macrococcus and Mammaliicoccus, and all Macrococcus, Mammaliicoccus and Staphylococcus species were identified with the OrthoFinder software37,38 and indicated in black, grey and light grey, respectively. Annotations are given for PBP1 (pbp1), PBP2 (pbp2), PBP3 (pbp3), PBP4 (pbp4), FmtA (fmtA) and the additional class A PBP (sgtA); the monofunctional glycosyltrans- ferase sgtB; SEDS family proteins (ftsW and rodA); the 16S-23S ribosomal DNA clusters; the four c-type cytochromes (ctaC, qcrC, cccA and cccB); RNA polymerase subunits (rpoB and rpoC); ribosomal protein (rpsJ); and tRNA dihydrouridine synthase (dus). The gene for the chromosomal replication ini- tiator protein dnaA found at oriC, the genes associated with attachment sites for SCCmec (rlmH) and McRI (rpsI) are indicated in red. The location of a lysylphosphatidylglycerol flippase/synthetase (mprF) gene is also indicate, which is found upstream of alternative island integration related to McRI. This figure appears in colour in the online version of JAC and in black and white in the print version of JAC.

Article Snippet: Macrococcus, Mammaliicoccus and Staphylococcus species specified as validly published in the List of Prokaryotic names with Standing in Nomenclature (LPSN) December 2021 were used for analysis (https://lpsn.dsmz.de/).

Techniques: Comparison, Sequencing

Journal: The Journal of antimicrobial chemotherapy

Article Title: The bla and mec families of β-lactam resistance genes in the genera Macrococcus, Mammaliicoccus and Staphylococcus: an in-depth analysis with emphasis on Macrococcus.

doi: 10.1093/jac/dkac107

Figure Lengend Snippet: Figure 6. Phylogenetic tree of cassette chromosome recombinase (ccr) genes present in Staphylococcus, Mammaliicoccus and Macrococcus. Reference strains used and their GenBank accession numbers are indicated. The tree was constructed in MEGA7 using the UPGMA method and 1000 replicates in the bootstrap test.203 The percentage of nucleotide identities shared between the macrococcal ccr allotypes, ccrAm1, ccrAm3, ccrBm1, ccrBm3, ccrCm1 and ccrCm2, and all other ccrs were calculated using multiple sequence alignment tool of Clustal Omega.202

Article Snippet: Macrococcus, Mammaliicoccus and Staphylococcus species specified as validly published in the List of Prokaryotic names with Standing in Nomenclature (LPSN) December 2021 were used for analysis (https://lpsn.dsmz.de/).

Techniques: Construct, Sequencing

Journal: The Journal of antimicrobial chemotherapy

Article Title: The bla and mec families of β-lactam resistance genes in the genera Macrococcus, Mammaliicoccus and Staphylococcus: an in-depth analysis with emphasis on Macrococcus.

doi: 10.1093/jac/dkac107

Figure Lengend Snippet: Figure 10. Core attachment site recognized by integrases (int) of McRImecD and phylogenetic tree of int present downstream of the 30S ribosomal protein S9 (rpsI) gene in Macrococcus and Staphylococcus species. (a) The sequence of the 61 bp core attachment (att) sites found at the rpsI locus (upper part) and an alternative locus downstream of a putative methyltransferase (mtase) gene in some Macrococcus species (lower part). Positions that hold variant bases compared with those of the core att site flanking McRImecD-1 in strains IMD0819 are highlighted in red. Numbers at the right and left of the sequence indicate additional bases belonging to extended direct repeats that are found upstream (DRL) and downstream (DRR) of the core att sites. att sites present at the 3′ end of the rpsI gene are indicated with underlined rpsI stop codon. DR5 of M. epidermidis Epi3002-OL is followed by 78 bases not related to DRR (+78) and 182 bases related to DRR. (b) Relatedness of integrases genes to int0473 of McRImecD-2/McRImecD-3 and int0819 of McRImecD-1. Phylogenetic tree was generated for nucleotide sequences using the UPGMA method in MEGA7.203 The percentage of nucleo- tide (nt) identity shared with int0473 and int0819 was determined using the multiple sequence alignment tool of Clustal Omega.202 Strains and GenBank accession numbers are indicated. This figure appears in colour in the online version of JAC and in black and white in the print version of JAC.

Article Snippet: Macrococcus, Mammaliicoccus and Staphylococcus species specified as validly published in the List of Prokaryotic names with Standing in Nomenclature (LPSN) December 2021 were used for analysis (https://lpsn.dsmz.de/).

Techniques: Sequencing, Variant Assay, Generated

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: ( a ) Coded-real values of five factors in PBD for observing top significant factors regulating the production of xylanase by P. chrysogenum strain A3 DSM105774. ( b ) An outline for multiple linear regression of PBD data for assessment of the production of xylanase by P. chrysogenum strain A3 DSM105774.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Activity Assay

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: ( a ) The levels of coded and real values of three independent factors in BBD for maximizing the xylanase production by P. chrysogenum strain A3 DSM105774. ( b ) Regression synopsis of BBD for assessing xylanase levels produced by P. chrysogenum strain A3 DSM105774.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Produced, Activity Assay

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: ( A ) Agarose gel (1% w / v ) electrophoresis showing the PCR product for the full length 18S rDNA gene amplified by PCR from the quest fungal strain. M: 1kbp DNA ladder. Lanes 1–5: amplified PCR product of 18S rDNA full length from the quest fungal strain from five PCR reactions Eppendorf tubes. ( B ) Neighbor-joining tree (constructed by CLC Sequence Viewer 8.0) depicting the phylogenetic relationship between 18S ribosomal DNA sequence of the , (the fungal isolate in this study) and other 18S ribosomal DNA sequences assigning to closely related fungi. Bootstrap values were presented on branch nodes (100 re-samplings). The fungal isolate CM3 is the quest fungal strain P. chrysogenum strain A3 DSM105774 and is indicated by a red arrow.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Agarose Gel Electrophoresis, Electrophoresis, Amplification, Construct, Sequencing

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: A photo of scanning electron microscope showing the conidia of P. chrysogenum A3 DSM105774. The magnification is ×3500.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Microscopy

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: Influence of the nitrogen source on the production of xylanase from P. chrysogenum A3 DSM105774 at 35 °C. Values are mean of 4 readings with standard error (SE). Symbols (a, b, and c) displayed on histogram bars were used to distinguish the significance in the xylanase levels imposed by different inorganic nitrogen sources. The histogram bars bearing the same symbol letter indicated non-significant difference. The histogram bars bearing different symbol letters indicated a significant difference at p -value ≤ 0.05.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques:

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: Influence of incubation temperature on the production of xylanase from P. chrysogenum A3 DSM105774 using minimal medium complemented with WS (0.5% ( w / v )) for 6 days. Values are mean of 4 readings ± standard errors. Symbols (a, b, and c) displayed on histogram bars were used to distinguish the significance in the xylanase levels imposed by different inorganic nitrogen sources. The histogram bars bearing the same symbol letter indicated non-significant difference. The histogram bars bearing different symbol letters indicated a significant difference at p -value ≤ 0.05.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Incubation

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: The 3D surface plot depicting the impact of WS concentration (%( w / v )) and initial pH of the production medium at fixed value of yeast extract concentration (%( w / v )) on the xylanase production from P. chrysogenum A3 DSM105774 in submerged state fermentation.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Concentration Assay

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: The 3D surface plot depicting the impact of WS concentration (%( w / v )) and yeast extract concentration (%( w / v )) at a fixed value of initial pH of the production medium on the xylanase production from P. chrysogenum A3 DSM105774 in submerged state fermentation.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Concentration Assay

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: The 3D surface plot depicting the influence of yeast extract concentration (%( w / v )) and initial pH of the production medium at a fixed value of WS concentration (%( w / v )) on the production of xylanase from P. chrysogenum A3 DSM105774 in submerged state fermentation.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Concentration Assay

Journal: Journal of Fungi

Article Title: Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774

doi: 10.3390/jof7090696

Figure Lengend Snippet: The estimated ridge of xylanase activity produced by P. chrysogenum strain A3 DSM105774 through the steepest ascent path of ridge analysis.

Article Snippet: To guarantee the accessibility of the fungal strain for the public, DSMZ was chosen to deposit the fungal strain with the accession number DSM105774.

Techniques: Activity Assay, Produced

Journal: Microorganisms

Article Title: Genome and Secretome Analysis of Staphylotrichum longicolleum DSM105789 Cultured on Agro-Residual and Chitinous Biomass †

doi: 10.3390/microorganisms9081581

Figure Lengend Snippet: Images of S. longicolleum FW57 (DSM105789) mycelia on six different media over 15 days. The selected media were potato dextrose agar (PDA), yeast extract peptone dextrose (YPD), complete medium (CM), malt extract agar (MEA), starch casein agar (SCA) and Mandels’ mineral salts (MS).

Article Snippet: Sequencing identified the isolate as a Humicola sp. strain, which is preserved at the German Collection of Microorganisms and Cell Cultures (DSMZ) under the identifier DSM105789.

Techniques: Starch

Journal: Biotechnology for Biofuels

Article Title: Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

doi: 10.1186/s13068-021-01927-9

Figure Lengend Snippet: Images of Fusarium metavorans FW16.1 (DSM105788) mycelia on six different media over four consecutive days. The selected media were potato dextrose agar (PDA), yeast extract peptone dextrose (YPD), complete medium (CM), malt extract agar (MEA), starch casein agar (SCA) and Mandels’ mineral salts (MS)

Article Snippet: The strain is preserved at the German Collection of Microorganisms and Cell Cultures (DSMZ) under the identifier DSM105788.

Techniques: Starch

Journal: Biotechnology for Biofuels

Article Title: Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources

doi: 10.1186/s13068-021-01927-9

Figure Lengend Snippet: CAZymes identified in the secretome of F. metavorans DSM105788 after liquid fermentation on six different synthetic/artificial cellulose substrates as well as two different agro-residual biomasses. The color coding is identical to Fig. 4

Article Snippet: The strain is preserved at the German Collection of Microorganisms and Cell Cultures (DSMZ) under the identifier DSM105788.

Techniques: